GoldenCheetah : Performance Software for Cyclists, Runners and Triathletes
author: GoldenCheetah
created: 2009-06-22 22:09:22
c-plus-plus cycling linux macos power-meter qt science triathlon windows c++


psychopy : For running psychology and neuroscience experiments
author: psychopy
created: 2010-09-01 17:00:04
experiment experiment-control experimental-design linguistics neuroscience psycholinguistics psychology psychophysics psychopy python science


Loris : LORIS is a web-accessible database solution for longitudinal multi-site studies.
author: aces
created: 2010-11-30 14:57:57
data-sharing database loris neuroimaging neuroinformatics science php


ReBench : Execute and document benchmarks reproducibly.
author: smarr
created: 2011-01-17 10:43:28
benchmarking continuous-benchmarking continuous-testing performance-tracking python reproducibility research-tool science


django-publications : A Django app for managing scientific publications.
author: lucastheis
created: 2011-08-12 20:02:38
bibtex django publishing python science


anystyle : Fast and smart citation reference parsing
author: inukshuk
created: 2011-08-31 16:24:21
bibliography citation-styles conditional-random-fields machine-learning parser ruby science


hyphy : HyPhy: Hypothesis testing using Phylogenies
author: veg
created: 2011-08-31 23:41:55
bioinfomatics c-plus-plus phylogenetics science hyphy


pybossa : PYBOSSA is the ultimate crowdsourcing framework (aka microtasking) to analyze or enrich data that can't be processed by machines alone.
author: Scifabric
created: 2011-11-20 07:23:02
citizen citizenscience crowd crowdsourcing knowledge microtasking opensource pybossa python research science


sci : Gentoo Science Overlay
author: gentoo
created: 2012-02-19 14:28:58
ebuild gentoo overlay science shell


abyss : :microscope: Assemble large genomes using short reads
author: bcgsc
created: 2012-03-19 23:13:39
assembler bioinformatics bloom-filter c-plus-plus genome mpi openmp scaffold science c++


LaTeX-examples : Examples for the usage of LaTeX
author: MartinThoma
created: 2012-08-09 05:02:14
latex mathematics research science tex tikz


purplemonkeydishwasher : A public git version of my research projects, i.e. articles and all that
author: flammie
created: 2012-08-22 10:49:12
bibliography computational-linguistics nlp reproducibility science shell


Thrive : The main repository for the development of the evolution game Thrive.
author: Revolutionary-Games
created: 2012-08-30 15:31:36
biology c-plus-plus evolution game ogre sandbox science simulation strategy thrive c++


obspy : ObsPy: A Python Toolbox for seismology/seismological observatories.
author: obspy
created: 2012-09-08 19:17:46
data-center earthquakes lgplv3 observatories python science seismology signal-processing waveforms web-services


nodegame : Complete nodegame repository with examples and documentation
author: nodeGame
created: 2012-10-09 21:14:46
behavioral experiment game games javascript multiplayer nodegame online-games real-time science synchronous


OpenML : Open Machine Learning
author: openml
created: 2012-12-11 11:27:40
citizen-scientists collaboration datasets machine-learning open-science opendata science css


OOMMFTools : OOMMFTools is a set of utilities designed to assist OOMMF postprocessing
author: deparkes
created: 2012-12-14 20:43:02
gui movie numpy oommf python science scientific-computing wxpython


ngless : NGLess: NGS with less work
author: ngless-toolkit
created: 2013-01-08 15:56:55
bioinformatics bioinformatics-pipeline bwa fastq fastq-format genomics haskell haskell-language metagenomics next-generation-sequencing ngs samtools science


openfluid : OpenFLUID framework and applications
author: OpenFLUID
created: 2013-01-21 11:31:53
boost c-plus-plus cmake complex-systems environmental-engineering gdal gui linux modelling ogr openfluid-framework qt5 science simulation c++


zonator : Utility tools for for anybody interested in using a familiar tool (R) in setting up Zonation runs and managing Zonation results.
author: cbig
created: 2013-03-12 13:57:04
conservation science spatial zonation r


diveMove : diveMove is a GNU R package with tools to represent, visualize, filter, analyse, and summarize time-depth recorder (TDR) data. It also provides miscellaneous functions for handling location data.
author: spluque
created: 2013-05-21 04:17:14
animal-behavior behavioural-ecology biology diving science r


osf.io : Facilitating Open Science
author: CenterForOpenScience
created: 2013-05-21 15:53:37
django django-rest-framework javascript openscience python science


pydap : A Python library implementing the Data Access Protocol (DAP, aka OPeNDAP or DODS).
author: pydap
created: 2013-06-03 20:42:50
dap data dods opendap science python


expyriment : Platform-independent lightweight Python library for designing and conducting timing-critical behavioural and neuroimaging experiments
author: expyriment
created: 2013-08-06 12:38:51
cognitive-science experiment-control neuroimaging-experiments neuroscience openscience opensesame psychology psychology-experiments python-library science stimulus-presentation python


easyleed : Software for Low Energy Electron Diffraction I(E)-spectra analysis
author: andim
created: 2013-08-08 13:36:21
leed science python


homebrew-cheminformatics : Cheminformatics formulae for the Homebrew package manager
author: mcs07
created: 2013-08-09 13:17:33
cheminformatics formulae homebrew packages ruby science


kernel-memtest : Hybrid memtest running in kernel mode, and userspace.
author: neuhalje
created: 2013-09-06 09:20:53
kernel linux linux-kernel memtest science python


ALog-BottleLogger : Arduino-compatible low-power field environmental data logging platform: hardware schematics and circuit board layouts
author: NorthernWidget
created: 2013-09-11 14:07:15
alog arduino datalogger science prolog


HipGISAXS : High-Performance GISAXS (Grazing Incidence Small Angle X-ray Scattering)
author: HipGISAXS
created: 2013-10-21 03:38:02
c-plus-plus gisaxs gpgpu nvidia-gpus saxs scattering science supercomputers xray c++


website : Source code for pinga-lab.org. These are the souce files used to generate the website HTML. Make your Pull Requests here.
author: pinga-lab
created: 2013-11-11 14:26:16
earth-science geophysics geoscience science urubu website html


website : This is the source code for my personal site
author: leouieda
created: 2013-12-20 15:32:55
bootstrap earth-science geophysics geoscience jinja2 python science scipy urubu html


bac-genomics-scripts : Collection of scripts for bacterial genomics
author: aleimba
created: 2014-01-09 08:24:59
annotation bioinformatics bioperl blast computational-biology genomics microbial-genomics microbiology mlst ngs opensource perl science scripts-collection sequencing unix


agilesci1 : AGILE satellite for gamma-ray astrophysics. Science Tools
author: AGILESCIENCE
created: 2014-01-14 08:53:06
astrophysics c-plus-plus frontend gamma-ray science c++


AlertaDengue : Portal de dados do Projeto Alerta Dengue
author: AlertaDengue
created: 2014-01-25 12:05:15
dengue-fever epidemiology science surveillance jupyter notebook


helena : Helena is an online survey/test framework designed for agile survey/test development, longitudinal studies and instant feedback.
author: gurix
created: 2014-02-23 08:33:01
longitudinal-studies psychology ruby science survey swiss


plantcv : Plant image analysis using OpenCV
author: danforthcenter
created: 2014-03-14 18:24:23
bioinformatics phenotyping plant science python


koi3278 : Analysis files for the KOI-3278 system
author: ethankruse
created: 2014-03-14 20:06:27
astronomy science python


Valmont-F : A open source Literature Based Discovery system, using Groovy & Grails, including a re-implementation of the Arrowsmith algorithm(s)
author: fogbeam
created: 2014-03-25 22:58:04
artificial-intelligence grails3 groovy hypothesis-generation literature-based-discovery research research-tool science swanson-linking css


rdataretriever : R interface to the Data Retriever
author: ropensci
created: 2014-03-26 21:47:02
data data-science database datasets r r-package rstats science


ruby-numeric-with-unit : Super cool gem that can calculate like this; (50['L/min'] + 3['m3/hr'] ) * 30['min'] #=> 3000 L
author: diaphragm
created: 2014-04-04 12:22:22
ruby ruby-numeric-with-unit rubygems science units


AAV : The code in this repository is used to control the Autonomous Android Vehicle (AAV)
author: IeiuniumLux
created: 2014-04-12 21:50:10
android autonomous-vehicles robotics science java


stellarium : Stellarium is a free GPL software which renders realistic skies in real time with OpenGL. It is available for Linux/Unix, Windows and MacOSX. With Stellarium, you really see what you can see with your eyes, binoculars or a small telescope.
author: Stellarium
created: 2014-04-13 02:41:56
astronomy c c-plus-plus planetarium qt5 science sky stars stellarium universe c++


fortran_examples : Fortran example programs for Intro to Computational Physics
author: goerz
created: 2014-04-21 03:11:51
fortran science teaching


R.rsp : :page_facing_up: R package: Dynamic generation of scientific reports
author: HenrikBengtsson
created: 2014-05-03 05:15:52
cran document markup package r report reproducibility science


reprozip : ReproZip is a tool that simplifies the process of creating reproducible experiments from command-line executions, a frequently-used common denominator in computational science.
author: VIDA-NYU
created: 2014-05-06 15:42:09
archiving computational-science docker linux nyu nyucds ptrace python reproducibility reproducible-research reproducible-science reprounzip reprozip science scientific-computing vagrant


PyChemia : Python Materials Discovery Framework
author: MaterialsDiscovery
created: 2014-05-14 20:54:34
materials python science


mousemorph : Tools for MRI mouse brain morphometry
author: nmpowell
created: 2014-05-15 15:44:08
cabi image-processing medical-imaging morphometry mouse-atlases mouse-brain mri preclinical-imaging science tbm vbm python


evolvingPlanet : Source code and artwork for Evolving Planet
author: xrubio
created: 2014-05-27 08:21:08
archaeology game-development outreach science science-fiction strategy-game c++


minerva : Minerva: client/server/services for analysis and visualization
author: Kitware
created: 2014-06-12 12:31:22
analysis earthscience geovisualization girder gis kitware python science scientific visualization webapp


opensim-core : SimTK OpenSim C++ libraries and command-line applications, and Java/Python wrapping.
author: opensim-org
created: 2014-06-12 16:57:56
biological-simulations biomechanics computational-biology computational-science engineering science simulation c++


seek : For finding, sharing and exchanging Data, Models, Simulations and Processes in Science.
author: seek4science
created: 2014-06-13 12:24:13
data datamanagement fair isa opendata publication science semantic-web synthetic-biology systems-biology ruby


postpic : The open source particle-in-cell post processor.
author: skuschel
created: 2014-06-22 20:55:11
particle-in-cell particles physics physics-analysis pic plasma post-processor python science simulation


SHARE : SHARE is building a free, open, data set about research and scholarly activities across their life cycle.
author: CenterForOpenScience
created: 2014-06-27 15:19:21
data elasticsearch harvest-data metadata openscience python scholarly-communication science


awesome-awesome : A curated list of awesome curated lists of many topics.
author: emijrp
created: 2014-07-01 13:27:50
awesome awesome-list curated-lists data data-processing database editor machine-learning science web-browser


awesome-datascience : :memo: An awesome Data Science repository to learn and apply for real world problems.
author: bulutyazilim
created: 2014-07-05 07:07:43
analytics awesome-list data-mining data-science data-scientists data-visualization deep-learning machine-learning science


docker-galaxy-stable : :whale::bar_chart::books: Docker Images tracking the stable Galaxy releases.
author: bgruening
created: 2014-08-12 13:26:14
data-science docker-image galaxy galaxyproject science dockerfile


hector : Hector model
author: JGCRI
created: 2014-08-12 21:20:53
climate-model hector science c++


mat : Reader and writer of MATLAB MAT-files
author: ready-steady
created: 2014-08-26 08:21:26
data-format matlab science go


srdb : Global soil respiration database
author: bpbond
created: 2014-08-27 17:43:07
carbon-cycle data global-database science soil soil-respiration r


codemeta : Minimal metadata schemas for science software and code, in JSON-LD
author: codemeta
created: 2014-09-07 01:44:20
codemeta doi json-ld metadata schema science python


souffle : Python modules for computational science and mathematics
author: pauljxtan
created: 2014-09-14 22:43:14
mathematics python science


awesome-biology : Curated list of resources for Biology.
author: raivivek
created: 2014-09-19 07:55:11
awesome-list bioinformatics biology books evolution science systems-biology


common-workflow-language : Repository for the CWL standards. Use https://www.biostars.org/t/cwl/ for support 😊
author: common-workflow-language
created: 2014-09-25 11:04:47
common-workflow-language commonwl containers cwl science workflow workflows python


matrix : Matrix laboratory
author: stainless-steel
created: 2014-10-05 07:28:50
linear-algebra science rust


source : The main source repository for the Raysect project.
author: raysect
created: 2014-10-05 13:39:49
cython framework optics python raytracer science scientific-computing


blas : Wrappers for BLAS (Fortran)
author: blas-lapack-rs
created: 2014-10-06 11:55:01
linear-algebra science wrappers rust


lapack : Wrappers for LAPACK (Fortran)
author: blas-lapack-rs
created: 2014-10-06 11:57:08
linear-algebra science wrappers rust


PyMicrotops : Python code for reading and processing data from the Microtops sun photometer
author: robintw
created: 2014-10-13 17:17:18
atmosphere instrument microtops-sun-photometer python science


special : Special functions
author: stainless-steel
created: 2014-10-16 07:48:31
algorithms science rust


hwr-experiments : Experiments for handwriting recognition
author: MartinThoma
created: 2014-10-20 19:28:09
machine-learning science python


qdynpylib : Support utilities for the QDYN Fortran Library (public mirror)
author: goerz
created: 2014-10-25 19:25:25
optimization physics python quantum-computing science


molecules : chemical graph theory library for JavaScript
author: chemplexity
created: 2014-11-05 05:04:05
cheminformatics chemistry d3-visualization graph-theory javascript science


ocaml-csv : CSV library for OCaml
author: Chris00
created: 2014-11-18 13:37:36
csv database ocaml science


waterbutler : WaterButler is a Python web application for interacting with various file storage services via a single RESTful API, developed at Center for Open Science.
author: CenterForOpenScience
created: 2014-11-25 14:42:31
async openscience python science storage-provider tornado


gatk : Official code repository for GATK versions 4 and up
author: broadinstitute
created: 2014-12-02 20:50:36
bioinformatics dna gatk genome genomics ngs science sequencing spark java


nanopolish : Signal-level algorithms for MinION data
author: jts
created: 2014-12-17 16:23:00
bioinformatics c-plus-plus epigenetics genome-assembly methylation science c++


catch : A package for designing compact and comprehensive probe sets.
author: broadinstitute
created: 2015-01-05 16:36:28
bioinformatics dna genome genomics ngs science sequencing viral python


ControverSciences : ControverSciences est un portail collaboratif et indépendant qui rassemble les publications scientifiques autour de questions controversées, en les rendant accessible à tous.
author: ThibaultLatrille
created: 2015-01-11 18:27:17
rails5 science website html


web-verse : Toolbox for deep, resilient, markup-invariant linking into HTML documents without their cooperation
author: scienceai
created: 2015-01-13 00:32:53
annotation publishing science javascript


Science.Mathematics.Algebra : Algebra system using Roslyn as a model.
author: Peter-Juhasz
created: 2015-01-16 22:41:40
algebra mathematics science c#


famous-algorithms : Collection of everyday algorithms - hashing, sorting, graphs, text, scientific algorithms, etc.
author: timasjov
created: 2015-01-26 11:09:11
algorithm numpy python science java


galaxy-rna-workbench : Galaxy RNA workbench
author: bgruening
created: 2015-01-28 12:18:39
galaxy galaxy-docker galaxyproject rna science sequencing html


boinc : Open-source software for volunteer computing and grid computing.
author: BOINC
created: 2015-02-03 19:28:28
boinc c-plus-plus citizen-science distributed-computing grid-computing high-performance-computing high-throughput-computing php science scientific-computing volunteer-computing


quizvragen : Quizvragen in het Nederlands over wetenschap, techniek, ruimte en actualiteit (toegespitst op België)
author: jwronline
created: 2015-02-12 05:48:21
english general jwr nederlands quiz science


Oat : Real-time position tracker for behavioral research
author: jonnew
created: 2015-02-21 23:09:37
animal-behavior augmented-reality c-plus-plus computer-vision electrophysiology neuroscience pose-estimation science c++


GitScience : A curated list of science- and engineering related repositories on GitHub and in neighboring counties
author: Hunter-Github
created: 2015-02-28 09:16:48
astronomy chemistry meteorology ocean oceanography orbital-mechanics science seismology space-science weather


Structure_threader : A wrapper program to parallelize and automate runs of "Structure", "fastStructure" and "MavericK".
author: StuntsPT
created: 2015-03-03 12:56:42
clustering doi genetics parallelize pypi python science structure structure-threader wrapper


paper-moho-inversion-tesseroids : Source code, data, and model results for "Fast non-linear gravity inversion in spherical coordinates with application to the South American Moho". Published in the Geophysical Journal International.
author: pinga-lab
created: 2015-03-10 13:40:35
earth-science fatiando-a-terra geophysics geoscience jupyter-notebook open-science python science jupyter notebook


colabo : CoLabo - an ecosystem of tools and methodologies for collaboration
author: Cha-OS
created: 2015-03-11 15:45:46
art collaboration collective-mind creativity innovation knowledge science javascript


periodic-table : Periodic elements data
author: andrejewski
created: 2015-03-15 21:26:25
chemistry element javascript periodic-elements science


openblas-src : Source of BLAS and LAPACK via OpenBLAS
author: blas-lapack-rs
created: 2015-03-16 09:01:29
linear-algebra science rust


netlib-src : Source of BLAS and LAPACK via Netlib
author: blas-lapack-rs
created: 2015-03-16 09:03:43
linear-algebra science rust


cbioportal : cBioPortal for Cancer Genomics
author: cBioPortal
created: 2015-03-18 20:09:09
cancer-genomics precision-medicine science visualization javascript


GettingCleaningDataProject : Assignment for the 'Getting and Cleaning Data' course on Coursera
author: BugBunny
created: 2015-03-22 06:46:36
coursera data science r


lapack : Bindings to BLAS and LAPACK
author: ready-steady
created: 2015-03-24 14:33:19
linear-algebra science go


cbrain : CBRAIN is a flexible Ruby on Rails framework for accessing and processing of large data on high-performance computing infrastructures.
author: aces
created: 2015-03-24 19:08:42
cbrain cbrain-api cbrain-architecture cbrain-platform cbrain-service data-processing hpc rails-application ruby science


hdf5 : Reader and writer of HDF5 files
author: ready-steady
created: 2015-03-25 15:39:56
data-format science go


recipy : Effortless method to record provenance in Python
author: recipy
created: 2015-03-27 09:07:42
database provenance python recipy reproducible-research science


scanomatic : Scanomatic
author: Scan-o-Matic
created: 2015-03-30 12:48:19
bioinformatics biology flask image-processing phenotyping python science


dissertation : Optimizing Robust Quantum Gates in Open Quantum Systems
author: goerz
created: 2015-03-30 15:34:46
optimization physics quantum-computing quantum-mechanics research science tex thesis


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