jbrowse : A modern genome browser built with JavaScript and HTML5.
author: GMOD
created: 2009-01-16 11:30:52
bioinformatics biology genome-annotation genome-browser genomics protein-annotation javascript


taxize : A taxonomic toolbelt for R
author: ropensci
created: 2011-05-19 15:05:33
api api-wrapper biodiversity biology darwincore data nomenclature r r-package rstats taxize taxonomy


eol-globi-data : Global Biotic Interactions provides access to existing species interaction datasets
author: jhpoelen
created: 2011-09-28 21:51:47
biodiversity bioinformatics biology diet diseases ecoinformatics ecology eol etl-framework food-webs globi parasites pollinators species-interactions java


intermine : A powerful open source data warehouse system
author: intermine
created: 2012-07-02 10:25:18
api bioinformatics biology clojure clojurescript data-visualisation data-visualization data-warehouse genetics genomics java lgplv3 open-source opensource perl postgresql python tomcat tomcat8 webservices


Thrive : The main repository for the development of the evolution game Thrive.
author: Revolutionary-Games
created: 2012-08-30 15:31:36
biology c-plus-plus evolution game ogre sandbox science simulation strategy thrive c++


FALDO : Feature Annotation Location Description Ontology
author: OBF
created: 2012-09-07 02:20:53
biology genomics ontology proteomics uniprot xslt


OpenWorm : Project Home repo for Central Dockerfile and Project-wide issues
author: openworm
created: 2012-12-01 03:36:14
biology elegans openworm simulation python


escher : Build, view, share, and embed pathway maps.
author: zakandrewking
created: 2013-01-16 17:48:18
bioinfomatics biology d3js escher javascript python visualization


cyclops : Precision current source, with optional optical feedback, for driving LEDs and laser diodes
author: jonnew
created: 2013-03-24 15:07:31
arduino biology fluorescence fluorescence-microscopy-imaging hardware led neuroscience optogenetics c++


rbison : Wrapper to the USGS Bison API
author: ropensci
created: 2013-05-08 07:48:34
api biodiversity biology data occurrences r r-package rstats spocc usgs


diveMove : diveMove is a GNU R package with tools to represent, visualize, filter, analyse, and summarize time-depth recorder (TDR) data. It also provides miscellaneous functions for handling location data.
author: spluque
created: 2013-05-21 04:17:14
animal-behavior behavioural-ecology biology diving science r


aquarium : The Aquarium Lab Operating System
author: klavinslab
created: 2013-06-13 15:47:06
biology lab lims molecular protocols ruby


yesterday-i-learned : Brainfarts are caused by the rupturing of the cerebral sphincter.
author: 1337
created: 2013-06-17 15:25:22
agile ansible anthropology apple archery aws biology business chemistry coffeescript django docker driving es6 flask korean linguistics random ruby women shell


biojs : 🔬A library of JavaScript components to represent biological data
author: biojs
created: 2013-08-02 15:05:19
biojs biology javascript visualisation


Bio.jl : Bioinformatics and Computational Biology Infrastructure for Julia
author: BioJulia
created: 2014-01-23 22:20:21
bioinformatics biology dna genomics julia


smof : Explore and analyze biological sequence data
author: incertae-sedis
created: 2014-04-27 12:34:29
bioinformatics biology fasta genomics sequence sequence-analysis python


rnacentral-webcode : RNAcentral website source code
author: RNAcentral
created: 2014-05-16 14:12:19
bioinformatics biology django django-rest-framework ncrna python rna


specio : Explore the tree of life with Specio and learn about Earth's amazing organisms and animals!
author: bonaert
created: 2014-07-06 18:24:22
biology d3 google-appengine life javascript


indra : INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.
author: sorgerlab
created: 2014-08-11 17:44:05
bioinformatics biology computational-biology indra modeling nlp pysb systems-biology python


awesome-biology : Curated list of resources for Biology.
author: raivivek
created: 2014-09-19 07:55:11
awesome-list bioinformatics biology books evolution science systems-biology


Conjunction : Simulator of secondary CONtact using Fisher's JUNCTION representation of genome admixture.
author: KamilSJaron
created: 2014-11-09 12:09:13
admixture biology genome-admixture hybrid-zone population-genetics secondary-contact simulator c++


taxizesoap : taxize but for SOAP data sources
author: ropensci
created: 2014-11-21 17:39:47
biology r r-package rstats soap taxize taxonomy


BuddySuite : Bioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree files
author: biologyguy
created: 2015-01-15 16:05:07
alignment bioinformatics biology command-line dna phylogenetics protein python workflow


pydna : Double stranded DNA & simulation of homologous recombination, Gibson assembly, cut&paste cloning in Python and Jupyter notebooks
author: BjornFJohansson
created: 2015-02-04 06:43:08
anaconda bioinformatics biology biopython dna gel gel-simulation jupyter jupyter-notebook jupyter-notebooks pydna python jupyter notebook


TA-protein-seq : Filters a .dat uniprot text file into predicted tail anchors.
author: JamesABaker
created: 2015-03-03 18:31:21
biological-data-analysis biology potential-snare-proteins protein python tail-anchored-proteins uniprot


BioPy : Biologically-Inspired and Machine Learning Algorithms written in Python
author: jaredthecoder
created: 2015-03-05 23:14:54
algorithm back-propagation biology genetic-algorithms hopfield-network neural-network python self-organization


popbio-map : VectorBase Population Biology Map
author: ikirmitz
created: 2015-03-09 14:53:19
bioinformatics biology css gis html javascript leaflet leaflet-map population-biology population-genetics


semester-biology :
author: datacarpentry
created: 2015-03-09 17:01:53
biology data-carpentry data-science r spatial-data sql teaching-materials html


biowardrobe : BioWardrobe: an integrated platform for analysis of epigenomics and transcriptomics data
author: Barski-lab
created: 2015-03-16 20:08:49
biology chip-seq epigenetics ngs-pipeline rna-seq sequence-alignment javascript


scanomatic : Scanomatic
author: Scan-o-Matic
created: 2015-03-30 12:48:19
bioinformatics biology flask image-processing phenotyping python science


hankshaweffect : Model, Data, and Analysis Scripts for "The Evolution of Cooperation by the Hankshaw Effect"
author: briandconnelly
created: 2015-03-30 14:19:26
biological-simulations biology dataset evolution numpy python r simulation


growthcurve : 📈R package for analyzing biological growth
author: briandconnelly
created: 2015-05-12 21:49:29
biology broom curve-fitting r tidy-data


placenta-viviparous : Placenta Viviparous Paper
author: uiuc-cgm
created: 2015-06-03 19:32:59
biology placenta publication rna-seq tex


cath-tools : Protein structure comparison tools such as SSAP and SNAP
author: UCLOrengoGroup
created: 2015-07-21 10:05:29
alignment bioinformatics biology cath cath-resolve-hits orengo pdb protein ssap structure superposition ucl c++


clustergrammer : An interactive heatmap visualization built using D3.js
author: MaayanLab
created: 2015-07-30 15:07:25
biology clustering d3 heatmap jupyter-notebook jupyter-widget python visualization javascript


deepchem : Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology
author: deepchem
created: 2015-09-24 23:20:28
biology deep-learning drug-discovery materials-science quantum-chemistry python


BactMan-Adventures : Follow BactMan in his adventures to discover science with fun mini-games!
author: PLNech
created: 2015-10-31 21:31:54
andengine android android-app biology competition education educational free-software game igem open-source science java


ermineR : R wrapper for ermineJ
author: PavlidisLab
created: 2015-11-10 05:13:54
bioinformatics biology enrichment-analysis gene-sets genomics ogan-bio r


biodb : An R package for accessing biological and chemical databases.
author: pkrog
created: 2015-11-10 10:43:52
biology cheminformatics chemistry databases r


InterMineR : R package for InterMine
author: intermine
created: 2015-12-14 16:34:44
biology genomics intermine r


primer-finder : Web application for selecting primers.
author: hrs
created: 2015-12-14 18:13:10
biology rails ruby


photon : PHOsphoproteomic dissecTiOn using Networks
author: jdrudolph
created: 2015-12-15 16:22:10
bioinformatics biological-data-analysis biology pathways phosphoproteomics phosphorylation proteomics signaling-networks signaling-pathways python


Schmidt_et_al_2016_community_similarity : Analysis code for a manuscript on community similarity computation
author: defleury
created: 2015-12-18 09:46:36
bioinformatics biology ecology networks r


JBioFramework : Growing suite of proteomics simulations for educational purposes
author: RITJBF
created: 2016-03-03 06:17:46
biochemistry biology chemistry educational java protein-separation proteins proteomics-simulations rit rit-college students


MixtureMining : Prototype bio-forensic analysis with WEKA
author: opcecco
created: 2016-03-08 22:58:33
biology forensics java


textbooks : :books: Openstax Textbooks ported to GitHub and hosted on GH Pages
author: philschatz
created: 2016-04-04 02:23:31
biology calculus cc-by cc-by-nc-sa free openstax physics psychology statistics textbook


ncbi-genome-download : Scripts to download genomes from the NCBI FTP servers
author: kblin
created: 2016-05-03 07:44:11
bioinformatics biology command-line download-genomes genbank genomics ncbi python


centromere : Genomic data warehousing, file parsing, and RESTful web services made easy.
author: blueprintmedicines
created: 2016-05-10 17:28:05
bioinformatics biology data-warehouse genomic-data-warehousing genomics web-services java


Mybiotools : Python scripts for biologists
author: mingzhangyang
created: 2016-05-11 23:09:27
bioinformatics biology python jupyter notebook


rna-mapped-script : Internship project for mapping reads from RNASeq data and creating contigs from the unmapped reads. The contigs were then BLASTed against a database of virii genomes.
author: bockp
created: 2016-05-19 20:26:49
bioinformatics biology internship produce-contigs rna-seq shell


platetools : An R package for plotting 96 / 384 / 1536 well plates
author: Swarchal
created: 2016-06-11 16:35:22
biology ggplot2 lab r


chise.js : A web application to visualize and edit the pathway models represented by SBGN Process Description Notation
author: iVis-at-Bilkent
created: 2016-06-24 11:48:12
bioinformatics biology editor network-visualization pathway-analysis pathways sbgn systems-biology javascript


BioFSharp : An open source bioinformatics toolbox written in F#.
author: CSBiology
created: 2016-07-14 08:52:06
amino-acids biocontainers bioinformatics bioinformatics-containers biology biostatistics dataprocessing datascience docker fsharp nucleotides sequence-analysis f#


cas : Cellular Automata Simulator
author: ghjansen
created: 2016-07-31 18:22:31
biology cellular-automata chaos complexity education fractal geometry math order pattern philosophy physics quantum science simulation simulator space symmetry time universe java


plantid : plant taxonomy
author: mezcel
created: 2016-08-21 06:50:06
biology csharp database image-analysis mysql taxonomic-classifications c#


genome-blender : Scripts to create cartoons of 3D genomes
author: open3dgenome
created: 2016-08-23 08:14:20
3dgenome 3dmodels biological-simulations biology blender3d chromatin chromatin-interaction genome tads python


lasagne4bio :
author: vanessajurtz
created: 2016-09-20 11:17:40
biology deep-learning sequence-analysis jupyter notebook


CS319_Group-28_Project-Virion : An Educational Virus Game
author: Merterm
created: 2016-09-27 20:27:54
biology game java


chalcid_comparative_analysis : Comparative analysis of ecological variables between sex and asex species of Chaldidoidea.
author: cmdoret
created: 2016-10-01 21:28:32
biology statistical-analysis web-scraper python


pbdmms : Some models
author: richelbilderbeek
created: 2016-10-05 08:37:27
academic biology cpp simulation speciation c++


LibAPR : Library for producing and processing on the Adaptive Particle Representation (APR).
author: AdaptiveParticles
created: 2016-10-10 10:56:58
adaptive biology image-processing microscopy multi-resolution sampling-methods c++


inter-climate_changes : uma proposta de sequência didática interdisciplinar que tem como base as mudanças climáticas e aquecimento global
author: demacdolincoln
created: 2016-10-23 23:11:12
aquecimento-global big-data biology complexity educational interdisciplinaryproject nature physics