Explore differences in preprocessing pipelines

arnold:/Users/lncd/willscripts/PowerFoci
foranw@wallace:~/src/PowerFoci
foranw@reese:~/src/PowerFoci

Visualize

see matlab/connectThres.m for colorized connections

dashed circle is negative change. solid dot is positive change. Top 1% shown.

Brain layer

see matlab/viewbrain.m

• requires additional libraries
• resampling still not ideal

Cluster

see countCompare.pl for percent identities

Vizualize Foci in Caret

see generateFoci.sh for generating color and foci file to be imported into caret

Using Caret

• Load spec file: standard_mesh_atlas/Left...
• Load spec file: standard_mesh_atlas/Right.., select "Keep ..."
• Open Data: load .foci and .focicolor
  • if foci are on "Left" all will be shown
• Layers -> Foci -> Map Sterotacix Foci
  • pretend to edit a foci
  • click map to surface (PALS doesnt work? -- need to figure out study linking)
  • Apply

Visiualize Foci in AFNI

see withAFNI/createSpheres.sh for generating sheres.