Explore differences in preprocessing pipelines
arnold:/Users/lncd/willscripts/PowerFoci
foranw@wallace:~/src/PowerFoci
foranw@reese:~/src/PowerFoci
Visualize
see matlab/connectThres.m
for colorized connections
dashed circle is negative change. solid dot is positive change. Top 1% shown.
Brain layer
see matlab/viewbrain.m
- requires additional libraries
- resampling still not ideal
Cluster
see countCompare.pl
for percent identities
Vizualize Foci in Caret
see generateFoci.sh
for generating color and foci file to be imported into caret
Using Caret
- Load spec file: standard_mesh_atlas/Left...
- Load spec file: standard_mesh_atlas/Right.., select "Keep ..."
- Open Data: load .foci and .focicolor
- if foci are on "Left" all will be shown
- Layers -> Foci -> Map Sterotacix Foci
- pretend to edit a foci
- click map to surface (PALS doesnt work? -- need to figure out study linking)
- Apply