biopredyn

Created: 2014-05-19 13:49
Updated: 2019-02-01 13:50
License: bsd-3-clause
c++

README.md

biopredyn-engine

This code is part of the BioPreDyn project; based on libSBML, libSEDML and libnuml Python wrappers, it aims at executing systems biology numerical experiments described using the Simulation Experiment Description Markup Language (SED-ML).

Installation

Instructions for installing the biopredyn-engine (including all its dependencies) can be found in the prototype user guide on this page, either as PDF or HTML document.

Tutorials and documentation

The training guide (located in the same folder than the prototype user guide) provides several examples on what can be done using the biopredyn-engine, and how to use it. The engine can also be used as a Python library; the available API is documented (using doxygen) on this page.

Dashboards

Results of the nightly tests can be browsed on this page.

License

This project is distributed under the terms of the BSD-3 clause license:

Copyright (c) [2012-2019], Cosmo Tech All rights reserved.

Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:

  1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer.

  2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.

  3. Neither the name of the copyright holder nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission.

THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

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