Panseq : Pan-genomic sequence analysis
author: chadlaing
created: 2011-10-26 01:33:16
accessory-genome comparative-genomics core-genome genome-sequencing pan-genome snps html


rsnps : Wrapper to a number of SNP web APIs
author: ropensci
created: 2012-01-19 00:19:21
data r r-package rstats snps web-api html


dna-traits : A fast 23andMe genome text file parser, now superseded by arv
author: cslarsen
created: 2014-01-05 22:45:02
23andme bioinformatics dna genomics health-report python snpedia snps


pecaller : map and call next generation genomic sequencing
author: wingolab-org
created: 2015-05-05 22:13:52
c genome genome-sequencing snps variants


impute : Automated imputation pipeline for arbitrary dataset and reference panels.
author: Chris1221
created: 2015-08-18 17:12:16
genetics imputation snps shell


radseq : Python scripts for parsing/analyses of RAD-seq data
author: pimbongaerts
created: 2015-08-28 06:12:27
pyrad python radseq snps vcf


inbix : In silico research group's bioinformatics toolbox for network and machine learning analysis
author: hexhead
created: 2015-11-04 15:10:13
analyses bioinformatics genes genetics interactions microarray networks plink relief-f rna-seq snps systems-biology c++


proxysnps : :bookmark: Get SNP proxies from the 1000 Genomes Project.
author: slowkow
created: 2015-12-15 18:55:32
bioinformatics linkage-disequilibrium rstats snps statistics r


Triglav : Variant calling format (vcf) file genomics pipeline for HPC and cloud
author: Bohdan-Khomtchouk
created: 2016-02-20 05:47:07
bioinformatics computational-biology high-performance-computing snps variant-calling vcf vcf-data c


hess : Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
author: huwenboshi
created: 2016-03-07 22:45:27
reference-panel snps summary-statistics html


SnpArrays.jl : Compressed storage for SNP data
author: OpenMendel
created: 2016-05-18 18:37:34
julia openmendel plink snps


model-free-data : Case-control genetics datasets evolved to be epistatic
author: greenelab
created: 2016-07-18 13:48:17
biodata-mining dataset epistasis genetics moore-lab open-data simulation snps postscript


DiagLockPick : Quickly identify and generate primers for diagnostic loci
author: bradfordcondon
created: 2016-07-28 17:46:30
blast boinformatics genomics phylogenetics primers snps perl


ManhattanPlot : Manhattan plot in VisualBasic
author: xieguigang
created: 2016-08-24 09:43:29
gwas manhattan-plot snps vbnet visualbasic visualization visual basic


SNPmatch : A simple python library to identify the most likely strain from an entire population
author: Gregor-Mendel-Institute
created: 2016-08-24 09:52:25
1001genomes arabidopsis arageno genotype genotyping genotyping-by-sequencing pipeline snpmatch snps python


strelka : Strelka2 germline and somatic small variant caller
author: Illumina
created: 2016-10-17 23:30:24
bioinformatics indels snps snvs c++


OSGenome : An Open Source Web Application for Genetic Data (SNPs) using 23AndMe and Data Crawling Technologies
author: mentatpsi
created: 2016-10-30 01:46:57
23andme data-crawling flask genetic-data genetics genome kendo python raw-data snpedia snps


16GT : Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model
author: aquaskyline
created: 2017-01-03 19:55:45
bioinformatics call-variants computational-biology genome indels snps vcf perl


PhaME-old :
author: mshakya
created: 2017-01-12 18:04:14
phylogeny snps perl


Genetic-Mechanisms-in-Duodenal-Polyposis : A collection of scripts documenting the parameter settings used to apply variant discovery to the exploration of Duodenal Polyposis.
author: nestornotabilis
created: 2017-01-30 18:18:41
bash perl snps somatic-variants variants


mcOutbryk : SNP calling pipeline using mccortex
author: hcdenbakker
created: 2017-03-01 17:09:15
bacterial-genomes bioinformatics debruijn-graph snps python


GWAS_QC_pipeline : Quality Control Summary Pipeline for Array-based Genome Studio Projects (idats, raw genotype quality)
author: tbrunetti
created: 2017-03-24 20:19:45
gwas illumina-bead-chip plink-files quality-assurance quality-control snps python


martini : 🍸Systems-biology approach to GWAS, now in R!
author: hclimente
created: 2017-04-06 17:31:13
bioinformatics genomics gwas network-analysis r-package snps systems-biology r


snp-placer : Take information about snps on short sequence reads and accurately place the snps in a reference genome
author: CNuge
created: 2017-05-31 17:51:33
align-dna-sequences bioinformatics contigs genome pandas samtools snps variant-calling python


GeneticVariation.jl : Datastructures and algorithms for working with genetic variation
author: BioJulia
created: 2017-06-14 15:44:42
bioinformatics biology julia mutation polymorphism snps variation


vcf2phylip : Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
author: edgardomortiz
created: 2017-10-10 22:16:01
alignment binary convert-snps diploid fasta haploid nexus outgroup phylip phylip-matrix phylogenetic-analysis phylogenetics polyploid snapp snps vcf vcf-files vcf-format python


master-thesis : Predicción de patogenicidad en polimorfismos de un sólo nucleótido usando Aprendizaje Automático
author: marlanbar
created: 2017-10-29 18:05:34
bioinformatics genetics machine-learning snps jupyter notebook


MuTrigo : pipeline for mutant gene candidate discovery
author: TC-Hewitt
created: 2017-11-08 02:34:20
fasta mpileup mutant ngs ngs-analysis ngs-pipeline pileup python python27 samtools snp snps snv


gwasTools :
author: ilarsf
created: 2017-11-13 08:52:39
genome-analysis gwas manhattan-plot optparse plotting power qq rscript snps r


phylip2eigenstrat : Python script to generate .snp and .ind Eigenstrat files from a PHYLIP infile
author: btmartin721
created: 2017-11-29 22:45:43
admixtools admixture d-statistic ddrad ddrad-sequencing eigenstrat f-statistics geno hybridization ind introgression phylip population-genetics population-genomics pyrad rad rad-sequencing snps python


vargeno : Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.
author: medvedevgroup
created: 2017-12-23 05:46:36
algorithms bioinformatics computational-biology data-structures genotyping snps c++


ClusterDuck : Disease Clustering from Literature Based on Minimal Training Data
author: NCBI-Hackathons
created: 2018-01-18 02:26:04
clustering corpus literature ncbi pubmed snps python


snv-calling-workflow : SNV calling workflow
author: spaethju
created: 2018-02-02 10:11:30
bioinformatics makefile snps snvs workflow


GenHap : A Novel Computational Method Based on Genetic Algorithms for Haplotype Assembly
author: andrea-tango
created: 2018-03-05 13:05:08
genetic-algorithm haplotype-assembly haplotypes master-slave multicore roche snps c++


pSBVB : Manual
author: lauzingaretti
created: 2018-04-18 12:54:23
genotype polyploidy snps roff


ScrubSV : A QC pipeline for SVs calls based on coverage and SNP calls
author: NCBI-Hackathons
created: 2018-08-02 15:34:03
ngs ngs-analysis qc snp snps structural-variation svs r


ExpressiVar :
author: NCBI-Hackathons
created: 2018-08-08 15:38:33
nygc rna-seq rnaseq snp snps python


Phylosnipping : Pipeline which make phylogeny with sequence of different sample
author: Frahiriart
created: 2018-11-11 16:48:55
alignment biology distance-matrices network phylogeny pipeline snps variants perl


Cookies help us deliver our services. By using our services, you agree to our use of cookies Learn more